Protonation Utilities
=====================

Modules for handling molecular protonation states.

Protonation
-----------

.. automodule:: shepherd_score.protonation.protonate
   :members:
   :undoc-members:
   :show-inheritance:

ChemAxon Utilities
------------------

.. automodule:: shepherd_score.protonation.chemaxon_utils
   :members:
   :undoc-members:
   :show-inheritance:

MolScrub Utilities
------------------

.. automodule:: shepherd_score.protonation.molscrub_utils
   :members:
   :undoc-members:
   :show-inheritance: