Python Module Index

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shepherd_score
    shepherd_score.alignment
    shepherd_score.alignment._jax
    shepherd_score.alignment._jax_parallel
    shepherd_score.alignment.utils.pca
    shepherd_score.alignment.utils.pca_jax
    shepherd_score.alignment.utils.pca_np
    shepherd_score.alignment.utils.se3
    shepherd_score.alignment.utils.se3_jax
    shepherd_score.alignment.utils.se3_np
    shepherd_score.conformer_generation
    shepherd_score.evaluations.docking.docking
    shepherd_score.evaluations.docking.pipelines
    shepherd_score.evaluations.docking.targets
    shepherd_score.evaluations.evaluate.evals
    shepherd_score.evaluations.evaluate.pipelines
    shepherd_score.evaluations.utils.convert_data
    shepherd_score.extract_profiles
    shepherd_score.generate_point_cloud
    shepherd_score.pharm_utils.pharmacophore
    shepherd_score.pharm_utils.pharmvec
    shepherd_score.protonation.chemaxon_utils
    shepherd_score.protonation.molscrub_utils
    shepherd_score.protonation.protonate
    shepherd_score.score.analytical_gradients
    shepherd_score.score.constants
    shepherd_score.score.electrostatic_scoring
    shepherd_score.score.electrostatic_scoring_jax
    shepherd_score.score.electrostatic_scoring_np
    shepherd_score.score.gaussian_overlap
    shepherd_score.score.gaussian_overlap_jax
    shepherd_score.score.gaussian_overlap_np
    shepherd_score.score.pharmacophore_scoring
    shepherd_score.score.pharmacophore_scoring_jax
    shepherd_score.score.pharmacophore_scoring_np
    shepherd_score.visualize