Python Module Index s s shepherd_score shepherd_score.alignment shepherd_score.alignment._jax shepherd_score.alignment._jax_parallel shepherd_score.alignment.utils.pca shepherd_score.alignment.utils.pca_jax shepherd_score.alignment.utils.pca_np shepherd_score.alignment.utils.se3 shepherd_score.alignment.utils.se3_jax shepherd_score.alignment.utils.se3_np shepherd_score.conformer_generation shepherd_score.evaluations.docking.docking shepherd_score.evaluations.docking.pipelines shepherd_score.evaluations.docking.targets shepherd_score.evaluations.evaluate.evals shepherd_score.evaluations.evaluate.pipelines shepherd_score.evaluations.utils.convert_data shepherd_score.extract_profiles shepherd_score.generate_point_cloud shepherd_score.pharm_utils.pharmacophore shepherd_score.pharm_utils.pharmvec shepherd_score.protonation.chemaxon_utils shepherd_score.protonation.molscrub_utils shepherd_score.protonation.protonate shepherd_score.score.analytical_gradients shepherd_score.score.constants shepherd_score.score.electrostatic_scoring shepherd_score.score.electrostatic_scoring_jax shepherd_score.score.electrostatic_scoring_np shepherd_score.score.gaussian_overlap shepherd_score.score.gaussian_overlap_jax shepherd_score.score.gaussian_overlap_np shepherd_score.score.pharmacophore_scoring shepherd_score.score.pharmacophore_scoring_jax shepherd_score.score.pharmacophore_scoring_np shepherd_score.visualize