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shepherd-score

  • GitHub
  • PyPI

Information

  • Installation
  • Usage Guide
  • Representations, Scoring, and Alignment

Performance

  • Alignment Throughput

Tutorials

  • Tutorials
    • Extracting interaction profiles
    • Scoring and alignment
    • Evaluation objects and pipelines

Documentation

  • API Reference
    • Container Module
      • Molecule
      • MoleculePair
      • MoleculePairBatch
    • Conformer Generation
    • Profile Extraction
    • Scoring Functions
      • Gaussian Overlap (Shape Similarity)
      • Electrostatic Scoring
      • Pharmacophore Scoring
    • Alignment Functions
      • Main Alignment Module
      • Analytical Gradients
      • JAX Alignment
      • JAX Parallel Alignment
      • Alignment Utilities
    • Evaluation Modules
      • Evaluation
      • Docking Evaluation
      • Evaluation Utilities
    • Pharmacophore Utilities
    • Protonation Utilities
    • Visualization
  • Repository
  • Show source
  • Open issue
  • .rst

Evaluation Modules

Evaluation Modules#

Modules for evaluating generated 3D conformers.

  • Evaluation
    • Evaluation Classes
    • Evaluation Pipelines
  • Docking Evaluation
    • Docking Classes
    • Docking Pipelines
    • Docking Targets
    • Protein-Ligand Interactions
  • Evaluation Utilities
    • Data Conversion
    • Protein & Ligand Preparation

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Alignment Utilities

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Evaluation

By Kento Abeywardane

© Copyright 2024-2026, Kento Abeywardane.