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shepherd-score

  • GitHub
  • PyPI

Information

  • Installation
  • Usage Guide
  • Representations, Scoring, and Alignment

Performance

  • Alignment Throughput

Tutorials

  • Tutorials
    • Extracting interaction profiles
    • Scoring and alignment
    • Evaluation objects and pipelines

Documentation

  • API Reference
    • Container Module
      • Molecule
      • MoleculePair
      • MoleculePairBatch
    • Conformer Generation
    • Profile Extraction
    • Scoring Functions
      • Gaussian Overlap (Shape Similarity)
      • Electrostatic Scoring
      • Pharmacophore Scoring
    • Alignment Functions
      • Main Alignment Module
      • Analytical Gradients
      • JAX Alignment
      • JAX Parallel Alignment
      • Alignment Utilities
    • Evaluation Modules
      • Evaluation
      • Docking Evaluation
      • Evaluation Utilities
    • Pharmacophore Utilities
    • Protonation Utilities
    • Visualization
  • Repository
  • Show source
  • Open issue
  • .rst

Scoring Functions

Contents

  • Constants

Scoring Functions#

Functions for computing 3D similarity scores between molecules.

Constants#

Constants for 3D representations.

  • Gaussian Overlap (Shape Similarity)
    • PyTorch Implementation
    • NumPy Implementation
    • JAX Implementation
  • Electrostatic Scoring
    • PyTorch Implementation
    • NumPy Implementation
    • JAX Implementation
  • Pharmacophore Scoring
    • PyTorch Implementation
    • NumPy Implementation
    • JAX Implementation

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Profile Extraction

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Gaussian Overlap (Shape Similarity)

Contents
  • Constants

By Kento Abeywardane

© Copyright 2024-2026, Kento Abeywardane.